Pull request system aliases should use the CakeAliasConstants.MainCakeAliasCategory and CakeAliasConstants.PullRequestSystemCakeAliasCategory constants for defining their category:
[CakeAliasCategory(CakeAliasConstants.MainCakeAliasCategory)]
public static class MyPullRequestSystemAliases
{
[CakeMethodAlias]
[CakeAliasCategory(CakeAliasConstants.PullRequestSystemCakeAliasCategory)]
public static ICodeAnalysisProvider MyPullRequestSystem(
this ICakeContext context)
{
}
}